Publications
Book Chapters involving ZooMS:
Buckley, M. (2022). Zooarchaeology by Mass Spectrometry (ZooMS). In Pollard, M., Armitage, R.A., Makarewicz, C. (Eds) Handbook of Archaeological Sciences. Second Edition. Wiley.
Buckley, M. (2018). Paleoproteomics: An Introduction to the Analysis of Ancient Proteins by Soft Ionisation Mass Spectrometry. In Lindqvist, C. and Rajora, Om. P. (Eds.) Paleogenomics. Springer, Chapter 50.
Buckley, M. (2018). Zooarchaeology by Mass Spectrometry (ZooMS) collagen fingerprinting for the species identification of archaeological bone fragments. In Giovas, C. and Lefebvre, M. (Eds.) Zooarchaeology in Practice. Springer, pp 227-247.
Buckley, M., Cooke, R.G., Fernanda Martinez, M., Bustamante, F., Jimenez, M., Lara, A., Guillermo Martin, J. (2017). In Mondini, M., Sebastian Munoz, A., and Marcelo Fernandez, P. (Eds.) Zooarchaeology in the Neotropics: Environmental diversity and human-animal interactions. Springer, pp 157-175.
Articles involving ZooMS:
1) Slimak, L., Zanolli, C., Higham, T., Frouin, M., Schwenninger, J.L., Arnold, L.J., Demuro, M. Douka, K., Mercier, N., Guérin, G., Valladas, H., Yvorra, P., Giraud, Y., Seguin-Orlando, A., Orlando, L., Lewis, J.E., Muth, X. Camus, H., Vandevelde, S., Buckley, M., Mallol, C., Stringer, C., Metz, L. Modern human incursion into Neanderthal territories 54,000 years ago at Mandrin, France. Science Advances 10.1126/sciadv.abj9496.
2) Hodgkins, J., Orr, C.M., Gravel-Miguel, C., Riel-Salvatore, J., Miller, C.E., Bondioli, L., Nava, A., Lugli, F., Talamo, S., Hajdinjak, H., Christiani, E., Romandini, M., Meyer, D., Drohobytsky, D., Kuester, F., Pothier Bouchard, G., Buckley, M., Manini, L., Baruffaldi, F., Silvestrini, S., Arrighi, S., Keller, H.M., Griggs, R.B., Peresani, M., Strait, D.S., Benazzi, S., Negrino, F. An infant burial from Arma Veirana in northwestern Italy provides insights into funerary practices and female personhood in early Mesolithic Europe. Scientific Reports 11, 23735 (2021). https://doi.org/10.1038/s41598-021-02804-z 3) Buckley, M., Pinsonneault, M., Brassey, C. and Rolett, B., 2021. High-throughput microCT and ZooMS collagen fingerprinting of Scombrid bone from the Marquesas Islands. Journal of Archaeological Science, 136, p.105475.
4) Marković, N., Ivanišević, V., Baron, H., Lawless, C. and Buckley, M., 2021. The last caravans in antiquity: Camel remains from Caričin Grad (Justiniana Prima). Journal of Archaeological Science: Reports, 38, p.103038.
5) Brown, S., Wang, N., Oertle, A., Kozlikin, M.B., Shunkov, M.V., Derevianko, A.P., Comeskey, D., Jope-Street, B., Harvey, V.L., Chowdhury, M.P., Buckley, M., Higham, T. and Douka, K. 2021. Zooarchaeology through the lens of collagen fingerprinting at Denisova Cave. Scientific Reports, 11(1), pp.15457-15457.
6) Hixon, S.W., Douglass, K.G., Crowley, B.E., Rakotozafy, L.M.A., Clark, G., Anderson, A., Haberle, S., Ranaivoarisoa, J.F., Buckley, M., Fidiarisoa, S. and Mbola, B., 2021. Late Holocene spread of pastoralism coincides with endemic megafaunal extinction on Madagascar. Proceedings. Biological sciences, 288(1955), p.20211204.
7) Reynolds, N., Lisitsyn, S.N., Eskova, D.K., Tsvetkova, N.A., Buckley, M. and Pustovalov, A.Y., 2021. Kostënki 9: The chronology and lithic assemblage of a ravettian site in Russia. Quaternary International, 587, pp.344-367.
8) Moreau, L., Draily, C., Cordy, J.M., Boyle, K., Buckley, M., Gjesfjeld, E., Filzmoser, P., Borgia, V., Gibson, S.A., Day, J. and Beyer, R., 2021. Adaptive Trade-offs Towards the Last Glacial Maximum in North-Western Europe: a Multidisciplinary View from Walou Cave. Journal of Paleolithic Archaeology, 4(2), pp.1-41.
9) Bradfield, J., Kitchener, A.C. and Buckley, M., 2021. Selection preferences for animal species used in bone-tool-manufacturing strategies in KwaZulu-Natal, South Africa. PLoS ONE, 16(4), p.e0249296.
10) van den Hurk, Y., Rielly, K. and Buckley, M., 2021. Cetacean exploitation in Roman and medieval London: Reconstructing whaling activities by applying zooarchaeological, historical, and biomolecular analysis. Journal of Archaeological Science: Reports, 36, p.102795.
11) Procopio, N., Hopkins, R.J., Harvey, V.L. and Buckley, M., 2021. Proteome Variation with Collagen Yield in Ancient Bone. Journal of Proteome Research, 20(3), p.1754.
12) Chowdhury, M.P., Choudhury, K.D., Bouchard, G.P., Riel-Salvatore, J., Negrino, F., Benazzi, S., Slimak, L., Frasier, B., Szabo, V., Harrison, R. and Hambrecht, G., Kitchener, A., Wogelius, R., and Buckley M. 2021. Machine learning ATR-FTIR spectroscopy data for the screening of collagen for ZooMS analysis and mtDNA in archaeological bone. Journal of Archaeological Science, 126, p.105311.
13) Vaiglova, P., Coleman, J., Diffey, C., Melanie, F., Pappa, M., Halstead, P., Valamoti, S., Cavanagh, W., Renard, J., Buckley, M. and Bogaard, A.M.Y., 2021. Exploring diversity in Neolithic agropastoral management in mainland Greece using stable isotope analysis. Environmental Archaeology. DOI: 10.1080/14614103.2020.1867292.
14) Buckley, M., Harvey, V.L., Orihuela, J., Mychajliw, A.M., Keating, J., Milan, J.N., Lawless, C., Chamberlain, A.T., Egerton, V.M. and Manning, P.L., 2020. Collagen sequence analysis reveals evolutionary history of extinct West Indies Nesophontes (‘island-shrews’). Molecular Biology and Evolution 37, 2931-43.
15) Mychajliw, A.M., Rick, T.C., Dagtas, N.D., Erlandson, J.M., Culleton, B.J., Kennett, D.J., Buckley, M. and Hofman, C.A., 2020. Biogeographic problem-solving reveals the Late Pleistocene translocation of a short-faced bear to the California Channel Islands. Scientific Reports, 10(1), pp.1-13.
16) Ananyevskaya, E., Buckley, M., Pal Chowdhury, M., Tabaldiev, K. and Motuzaite Matuzeviciute, G., 2020. Specialized wool production economy of prehistoric farmstead of Chap I in the highlands of Central Tian Shan (Kyrgyzstan). International Journal of Osteoarchaeology doi/10.1002/oa.2921.
17) Halffman, C.M., Potter, B.A., McKinney, H.J., Tsutaya, T., Finney, B.P., Kemp, B.M., Bartelink, E.J., Wooller, M.J., Buckley, M., Clark, C.T. and Johnson, J.J., 2020. Ancient Beringian paleodiets revealed through multiproxy stable isotope analyses. Science Advances, 6(36), p.eabc1968.
18) Szpak, P. and Buckley, M., 2020. Sulfur isotopes (δ34S) in Arctic marine mammals: indicators of benthic vs. pelagic foraging. Marine Ecology Progress Series, 653, pp.205-216.
19) Bouchard, G.P., Riel-Salvatore, J., Negrino, F. and Buckley, M. (2020). Archaeozoological, Taphonomic and ZooMS Insights into The Protoaurignacian Faunal Record from Riparo Bombrini. Quaternary International 551, pp. 243-63.
20) Guiry, E.J., Buckley, M., Orchard, T.J., Hawkins, AL., Needs-Howarth, S., Holm, E., Szpak, P. (2020). Deforestation caused abrupt shift in Great Lakes nitrogen cycle. Limnology and Oceanography 65, pp. 1921-35.
21) Buckley, M. and Cheylan, M. (2020). Collagen fingerprinting for the species identification of archaeological amphibian remains. Boreas 49, pp. 709-17.
22) Vaiglova, P., Gardeisen, A., Buckley, M., William Cavanagh, Josette Renard, Julia Lee-Thorp and Amy Bogaard (2020). Further insight into Neolithic agricultural management at Kouphovouno, southern Greece: expanding the isotopic approach. Archaeol Anthropol Sci 12, 43.
23) Trentacoste, A., Lightfoot, E., Le Roux, P., Buckley, M., Kansa, S.W., Esposito, C. and Gleba, M. (2020). Heading for the hills? A multi-isotope study of sheep management in first-millennium BC Italy. Journal of Archaeological Science: Reports, 29, p.102036.
24) Buckley, M., Recabarren, O.P., Lawless, C., García, N. and Pino, M. (2019). A molecular phylogeny of the extinct South American gomphothere through collagen sequence analysis. Quaternary Science Reviews, 224, p.105882.
25) Bouchard, G.P., Mentzer, S.M., Riel-Salvatore, J., Hodgkins, J., Miller, C.E., Negrino, F., Wogelius, R. and Buckley, M. (2019). Portable FTIR for on-site screening of archaeological bone intended for ZooMS collagen fingerprint analysis. Journal of Archaeological Science: Reports, 26, p.101862.
26) Harvey, V.L., Egerton, V.M., Chamberlain, A.T., Manning, P.L., Sellers, W.I. and Buckley, M. (2019). Interpreting the historical terrestrial vertebrate biodiversity of Cayman Brac (Greater Antilles, Caribbean) through collagen fingerprinting. The Holocene, 29(4), pp.531-542.
27) Buckley, M. and Herman, J. (2019). Species identification of Late Pleistocene bat bones using collagen fingerprinting. International Journal of Osteoarchaeology 2019 pp.1-9.
28) Douka, K., Slon, V., Jacobs, Z., Bronk Ramsey C., Shunkov, M., Derevianko, A. P., Mafessoni, M., Kozlikin, M. B., Li, B., Grun, R., Comesky, D., Deviese, T., Brown, S., Viola, B., Kinsley, L., Buckley, M., Meyer, M., Roberts, R. G., Paabo, S., Kelso, J., & Higham, T. (2019). Age estimates for hominin fossils and the onset of the Upper Palaeolithic at Denisova Cave. Nature, 565, 640-644.
29) Sanchez, G. M., Rick, T. C., Culleton, B. J., Kennett, D. J., Buckley, M., Erlandson, J. M., & Losey, R. L. (2018). Radiocarbon dating legacy collections: A Bayesian analysis of high-precision AMS 14C dates from the Par-Tee site, Oregon. Journal of Archaeological Science: Reports, 21, 833-848.
30) Harvey, V. L., Daugnora, L., & Buckley, M. (2018). Species identification of ancient Lithuanian fish remains using collagen fingerprinting. Journal of Archaeological Science, 98, 102-111.
31) Buckley, M., Gu, M., Herman, J., Junno, J. A., Denys, C., & Chamberlain, A. T. (2018). Species identification of voles and lemmings from Late Pleistocene deposits in Pin Hole Cave (Creswell Crags, UK) using collagen fingerprinting. Quaternary International, 483, 83-89.
32) Tomasso, A., Rots, V., Purdue, L., Beyries, S., Buckley, M., Cheval, C., Cnuts, D., Coppe, J., Julien, M.A., Grenet, M. & Lepers, C. (2018). Gravettian weaponry: 23,500-year-old evidence of a composite barbed point from Les Prés de Laure (France). Journal of Archaeological Science, 100, 158-175.
33) Birch, S. E. P., Scheu, A., Buckley, M., & Çakırlar, C. (2018). Combined osteomorphological, isotopic, aDNA, and ZooMS analyses of sheep and goat remains from Neolithic Ulucak, Turkey. Archaeological and Anthropological Sciences, 1-13.
34) Hofman, C. A., Rick, T. C., Erlandson, J. M., Reeder-Myers, L., Welch, A. J., & Buckley, M. (2018). Collagen Fingerprinting and the Earliest Marine Mammal Hunting in North America. Scientific reports, 8(1), 10014.
35) Gu, M., & Buckley, M. (2018). Semi-supervised machine learning for automated species identification by collagen peptide mass fingerprinting. BMC bioinformatics, 19(1), 241.
36) Desmond, A., Barton, N., Bouzouggar, A., Douka, K., Fernandez, P., Humphrey, L., Morales, J., Turner, E., & Buckley, M. (2018). ZooMS identification of bone tools from the North African Later Stone Age. Journal of Archaeological Science, 98, 149-157.
37) Hufthammer, A. K., Arntsen , L., Kitchener, A. C. & Buckley, M. (2018). Grey whale (Eschrichtius robustus) in Norwegian waters 2000 years ago. Palaeogeography, Palaeoclimatology, Palaeoecology, 495, 42-47.
38) Buckley, M., Cosgrove, R., Garvey, J. & Prideaux, G. J. (2017). Identifying remains of extinct kangaroos in Late Pleistocene deposits using collagen fingerprinting. Quaternary Science Reviews, 32(5), 653-660.
39) Prendergast, M.E., Buckley, M., Crowther, A., Frantz, L., Eager, H., Lebrasseur, O., Hutterer, R., Hulme-Beaman, A., Van Neer, W., Douka, K., Veall, M.A., Quintana Morales, E.M., Schuenemann, V.J., Reiter, E., Allen, R., Dimopoulos, E.A., Helm, R.M., Shipton, C., Mwebi, O., Denys, C., Horton, M., Wynne-Jones, S., Fleisher, J., Radimilahy, C., Wright, H., Searle, J.B., Krause, J., Larson, G., Boivin, V. (2017). Reconstructing Asian faunal introductions to eastern Africa from multi-proxy biomolecular and archaeological datasets. PLoS ONE, 12(8), e0182565.
40) Devièse, T., Karavanić, I., Comeskey, D., Kubiak, C., Korlević, P., Hajdinjak, M., Radović, S., Procopio, N., Buckley, M., Pääbo, S. & Higham, T. (2017). Direct dating of Neanderthal remains from the site of Vindija Cave and implications for the Middle to Upper Paleolithic transition. Proceedings of the National Academy of Sciences of the United States of America 114 (40), 10606-10611.
41) Szpak, P., Buckley, M., Darwent, C. M. & Richards, M. P. (2017). Long-term ecological changes in marine mammals driven by recent warming in northwestern Alaska. Global Change Biology, 24, 490-503.
42) Wadsworth, C., Procopio, N., Anderung, C., Carretero, J-M., Iriarte, E., Valdiosera, C., Elburg, R., Penkman, K. & Buckley, M. (2017). Comparing ancient DNA survival and proteome content in 69 archaeological cattle tooth and bone samples from multiple European sites. Journal of Proteomics, 158, 1-8.
43) Buckley, M., Harvey, V., & Chamberlain, A. (2017). Species identification and decay assessment of Late Pleistocene fragmentary vertebrate remains from Pin Hole Cave (Creswell Crags, UK) using collagen fingerprinting. Boreas 46(3), 402-411.
44) Solazzo, C., Courel, B., Connan, J., van Dongen, B. E., Jones, H., Penkman, K., Taylor, S., Demarchi, B., Adam, P., Schaeffer, P., Nissenbaum, A., Bar-Yosef, O., and Buckley, M. (2016). Identification of the earliest collagen- and plant-based coatings from Neolithic artefacts (Nahal Hemar cave, Israel). Scientific Reports, 6, 31053.
45) Brown, S., Higham, T., Slon, V., Paabo, S., Meyer, M., Douka, K., Brock, F., Comesky, D., Procopio, N., Shunkov, M., Derevianko, A., and Buckley, M. (2016). Identification of a new hominin bone from Denisova Cave, Siberia using collagen fingerprinting and mitochondrial DNA analysis. Scientific Reports, 6, 23559.
46) Buckley, M. (2016). Species Identification of Bovine, Ovine and Porcine Type 1 Collagen; Comparing Peptide Mass Fingerprinting and LC-Based Proteomics Methods. International Journal of Molecules Sciences, 17(445), 1-17.
47) Harvey, V.L., Manning P.L., Chamberlain A.T., Egerton V.M. and Buckley, M. (2016). Collagen fingerprinting: a rapid screening technique for radiocarbon dating. PloS ONE, 11(3), e0150650.
48) Buckley, M., Gu, M., Shameer, S., Patel, S. & Chamberlain, A. T. (2016). High-throughput collagen fingerprinting of intact microfaunal remains; a low-cost method for distinguishing between murine rodent bones. Rapid Communications in Mass Spectrometry, 30, 1-8.
49) Martínez-Polanco, M.F., Jiménez-Acosta, M., Buckley, M., Cooke, R.G. (2015). Impactos humanos tempranos en fauna insula: El caso de los venados de Pedro González (Archipiélago de las Perlas, Panamá). Revista de Bioarqueología “Arqueobios”, 9 (1), 202-214.
50) Buckley, M. (2015). Ancient collagen reveals evolutionary history of the endemic South American ‘ungulates’. Proceedings of the Royal Society B, 282(1806).
51) van der Sluis, L.G., Hollund, H.I., Buckley, M., De Louwd, P.G.B., Rijsdijke, K.F., Kars, H. (2014). Combining histology, stable isotope analysis and ZooMS collagen fingerprinting to investigate the taphonomic history and dietary behaviour of extinct giant tortoises from the Mare aux Songes deposit on Mauritius. Palaeogeography, Palaeoclimatology, Palaeoecology, 416, 80-91.
52) von Holstein, I.C.C., Ashby, S.P., van Doorn, N.L., Sachs, S.M., Buckley, M., Meiric, M., Barnes, I., Brundlee, A. and Collins, M.J. (2014). Searching for Scandinavians in pre-Viking Scotland: molecular fingerprinting of Early Medieval combs. Journal of Archaeological Science, 41, 1-6.
53) Buckley, M., Fraser, S., Herman, J.S., Melton, N.D., Mulville, J., and Pálsdóttir, A.H. (2014). Species identification of archaeological marine mammals using collagen fingerprinting. Journal of Archaeological Science, 41, 631-641.
54) Buckley, M. (2013). A molecular phylogeny of Plesiorycteropus reassigns the extinct mammalian order ‘Bibymalagasia’. PLoS ONE, 8(3), e59614.
55) Price, M.D., Buckley, M., Kersel, M.M. and Rowan, Y.M. (2013). Animal management strategies during the chalcolithic in the Lower Galiliee: new data from Marj Rabba (Israel). Paleorient, 39(2), 183-201
56) Kirby, D.P., Buckley, M., Promise, E., Trauger, S.A., and Holdcraft, T.R. (2013). Identification of collagen-based materials in cultural heritage. Analyst, 138(17), 4849-4858 57) Rybczynski, N., Gosse, J.C., Harington, C.R., Wogelius, R.A., Hidy, A.J, and Buckley, M. (2013). Mid-Pliocene warm-period deposits in the High Arctic yield insight into camel evolution. Nature Communications, 4, art1550
58) Buckley, M., Melton, N.D. and Montgomery, J. (2013). Proteomics analysis of ancient food vessel stitching reveals >4000-year-old milk protein. Rapid Communications in Mass Spectrometry, 27(4), 531-538.
59) Buckley, M. and Kansa, S.W. (2011). Collagen fingerprinting of archaeological bone and teeth remains from Domuztepe, South Eastern Turkey. Archaeological and Anthropological Sciences, 3(3), 271-280.
60) Buckley, M. and Collins, M.J. (2011). Collagen survival and its use for species identification in Holocene-lower Pleistocene bone fragments from British archaeological and palaeontological sites. Antiqua, 1(1), e1.
61) Richter, K. K., Wilson, J., Jones, A.K.G., Buckley, M., van Doorn, N. and Collins, M (2011). Fish ‘n chips: ZooMS peptide mass fingerprinting in a 96 well plate format to identify fish bone fragments. Journal of Archaeological Science, 38(7), 1502-1510.
62) Buckley, M., Larkin, N., and Collins, M (2011). Mammoth and Mastodon collagen sequences; survival and utility. Geochimica et Cosmochimica Acta, 75, 2007-2016.
63) Campos, P., Sher, A., Mead, J., Tikhonov, A., Buckley, M., Collins, M.J., Willerslev, E., Gilbert., MTP (2010). Clarification of the taxonomic relationship of the extant and extinct ovibovids, Ovibos, Praeovibos, Euceratherium and Bootherium. Quaternary Science Reviews, 29(17-18), 2123-2130.
64) Buckley, M., Kansa, S. W., Howard, S., Campbell, S., Thomas-Oates, J. and Collins, M (2010). Distinguishing between archaeological sheep and goat bones using a single collagen peptide. Journal of Archaeological Science, 37, 13-20.
65) Collins, M., Buckley, M., Grundy, H.H., Thomas-Oates, J., Wilson, J., and van Doorn, N. (2010). ZooMS: the collagen barcode and fingerprints. Spectroscopy Europe, 22, 2-2.
66) Rijsdijk, K.F., Hume, J.P., Bunnik, F.B., Florens, V., Baider, C., Shapiro, B., van der Plicht, J., Janoo, A., Griffiths, O., van den Hoek Ostende, L. W., Cremer, H., Vernimmen, T., De Louw, P. G. B., Bholah, A., Saumtally, S., Porch, N., Haile, J., Buckley, M., Collins, M. and Gittenberger, E (2009). Mid-Holocene Concentration-Lagerstätte on oceanic island Mauritius provides a window into the ecosystem of the dodo (Raphus cucullatus). Quaternary Science Reviews, 28, 14-24.
67) Buckley, M., Collins, M.J., Thomas-Oates, J., and Wilson, J. (2009). Species identification by analysis of bone collagen using matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry. Rapid Communications in Mass Spectrometry, 23(23), 3843-3854.
68) Buckley, M., Collins, M.J. and Thomas-Oates, J. (2008). A method of isolating the collagen (I) alpha 2 chain carboxytelopeptide for species identification in bone fragments. Analytical Biochemistry, 374, 325-334.
69) Buckley, M., Anderung, C., Penkman, K., Raney, B., Gotherstrom, A., Thomas-Oates, J. and Collins, M.J (2008). Comparing the survival of osteocalcin and mtDNA in archaeological bone from four European sites. Journal of Archaeological Science, 35, 1756-1764.